Packing Analyzer
Description:
Packing Analyzer detects the geometry of epithelial tissues
© 2007-2012 Benoit Aigouy
Author:
Benoit Aigouy (benoit.aigouy@u-clermont1.fr)
Reza Farhadifar and Douglas Staple made the stretch and polarity algorithms
Eaton Lab
MPI-CBG
Installation:
Unzip the file and double click on “packingAnalyzer2.jar”
To run Packing Analyzer directly from the command line type:
java–Xmx1024m –jar /path/to/packingAnalyzer2.jar
Requirements:
Requires java 1.6 or > to be installed on your system
Packing Analyzer works under Linux, Windows (2000, XP, Vista, 7) and MacOSX (Mac Intel Only)
History:
2010/09/06 (V 2.0):
Second version
Please report bugs to benoit.aigouy@u-clermont1.fr only if you have consulted the FAQ and watched the tutorials and couldn’t find an answer there.
2007/11/20 (V 1.0): First version
Not longer supported (please use V2.0)
Please report bugs to benoit.aigouy@u-clermont1.fr
Downloads:
Packing Analyzer V2.0 is available for free upon request to aigouy@mpi-cbg.de
Tutorials:
Segmentation/determine packing/stretch…
I want to track cells and bonds
I want to plot my data/please give me an excel file/I want to create a virtual clone
I want to create a video/I want to have a nice picture for my presentation
I want to correct a tracking error (lost cells/swapped cells)
How do I know if I have to rerun something/can I trust the data
I want to correct a mistake in cell divisions
How can I make macros ? (TODO)
How can I detect errors ? (TODO)
How can I detect polarity ? (TODO)
FAQ:
FAQ
Licences:
Licence Packing Analyzer
Third party licences
Wing
Wing simulates the growth of a Drosophila wing disc epithelium
© 2007 Reza Farhadifar
Reza Farhadifar (farhadi@mpipks-dresden.mpg.de)
Julicher Lab
MPI-PKS
Unzip the file and double click on “wing.jar”
java –jar /path/to/wing.jar
Requires java 1.5 or > to be installed on your system
Wing only works under Windows
Please report bugs to farhadi@mpipks-dresden.mpg.de
Download Wing (for java 1.5)
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