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Packing Analyzer

 

Description:

Packing Analyzer detects the geometry of epithelial tissues

© 2007-2012 Benoit Aigouy

Author:

Benoit Aigouy (benoit.aigouy@u-clermont1.fr)

Reza Farhadifar and Douglas Staple made the stretch and polarity algorithms

Eaton Lab

MPI-CBG

Installation:

Unzip the file and double click on “packingAnalyzer2.jar”

To run Packing Analyzer directly from the command line type:

java–Xmx1024m –jar /path/to/packingAnalyzer2.jar

Requirements:

Requires java 1.6 or > to be installed on your system

Packing Analyzer works under Linux, Windows (2000, XP, Vista, 7) and MacOSX (Mac Intel Only)

History:

2010/09/06 (V 2.0):

Second version

Please report bugs to benoit.aigouy@u-clermont1.fr only if you have consulted the FAQ and watched the tutorials and couldn’t find an answer there.

2007/11/20 (V 1.0):
First version

Not longer supported (please use V2.0)

Please report bugs to benoit.aigouy@u-clermont1.fr

Downloads:

Packing Analyzer V2.0 is available for free upon request to aigouy@mpi-cbg.de

Tutorials:

Segmentation/determine packing/stretch…

I want to track cells and bonds

I want to plot my data/please give me an excel file/I want to create a virtual clone

I want to create a video/I want to have a nice picture for my presentation

I want to correct a tracking error (lost cells/swapped cells)

How do I know if I have to rerun something/can I trust the data

I want to correct a mistake in cell divisions

How can I make macros ? (TODO)

How can I detect errors ? (TODO)

How can I detect polarity ? (TODO)

FAQ:

FAQ

Licences:

Licence Packing Analyzer

Third party licences

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Wing

 

Description:

Wing simulates the growth of a Drosophila wing disc epithelium

© 2007 Reza Farhadifar

Author:

Reza Farhadifar (farhadi@mpipks-dresden.mpg.de)

Julicher Lab

MPI-PKS

Installation:

Unzip the file and double click on “wing.jar”

To run Packing Analyzer directly from the command line type:

java –jar /path/to/wing.jar

Requirements:

Requires java 1.5 or > to be installed on your system

Wing only works under Windows

History:

2007/11/20 (V 1.0):
First version

Please report bugs to farhadi@mpipks-dresden.mpg.de

Downloads:

Download Wing (for java 1.5)

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